PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0066s0056.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family WRKY
Protein Properties Length: 343aa    MW: 37299.7 Da    PI: 6.9804
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0066s0056.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30151209259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +D ++WrKYGqK++kgs++pr+YY+C+s+  C ++k+ver+++dp+++++tY+ +Hnh+
  Kaladp0066s0056.1.p 151 SDIWSWRKYGQKPIKGSPYPRGYYKCSSSkACLARKQVERNRTDPTMFIVTYTADHNHP 209
                          79*************************9989***************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.3E-30137211IPR003657WRKY domain
PROSITE profilePS5081133.752145211IPR003657WRKY domain
SuperFamilySSF1182906.02E-25148211IPR003657WRKY domain
SMARTSM007743.8E-34150210IPR003657WRKY domain
PfamPF031068.7E-25152209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEPDWDLHAV VRGFAAINKT APSAVAAPTT AAPLFSSTRD VDDQKHHVFC PTNLAAPDQL  60
HELYSPYLLN PPARTQSVQP TISSYFVALE ASKKRTQQQQ QQLLGTISTT SPAKTITPSV  120
PAPHSQTSHK PKRRKSQQKK VCHVPAEALS SDIWSWRKYG QKPIKGSPYP RGYYKCSSSK  180
ACLARKQVER NRTDPTMFIV TYTADHNHPA PTHKNSLAGT TRNTNPLSSP SSTAHDDTNL  240
HISKPCSSSS MGTMSPTASL GDEVLQLTDK MESKSADIGG EDISRTNLVD DVMGFLDMDV  300
TDDFFEDLDE IAGPPMDGCS PDHVLPSFPC LANSSSTKCD MD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2lex_A1e-161492111677Probable WRKY transcription factor 4
1wj2_A1e-161492111677Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.14e-67WRKY family protein